From VisTrailsWiki

Contents 1 Configuring Web Services in VisTrails 1.1 Enabling the webServices package 1.2 Adding web services URLs in VisTrails 2 Web Services Demos 2.1 Data Transformation 2.2 EMBOSS web services 2.3 KEGG web services 2.4 KEGG Search Entities web service 2.5 ChEBI web service 2.6 NOAA web services 3 Web Services Demos Guide

[edit] Configuring Web Services in VisTrails

[edit] Enabling the webServices package

The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select webServices and click on Enable.

[edit] Adding web services URLs in VisTrails

To add the web services URLs to VisTrails, select webServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services URLs. Select wsdlList and click on the value field. You can type the web services URLs you want.

[edit] Web Services Demos

A set of Bioinformatics and other web services workflows demos are included in the WebServicesDemos.zip file. Before using them you need to add the web services URLs. They are specified in the following subsections.

[edit] Data Transformation

• http://xml.nig.ac.jp/wsdl/DDBJ.wsdl

[edit] EMBOSS web services

• http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
• http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
• http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
• http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
• http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
• http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
• http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl

[edit] KEGG web services

• http://soap.genome.jp/KEGG.wsdl

[edit] KEGG Search Entities web service

• http://soap.genome.jp/KEGG.wsdl
• http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl

[edit] ChEBI web service

• http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl

[edit] NOAA web services

• http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
• http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
• http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl

[edit] Web Services Demos Guide

If you would like to learn more about creating workflows that use web services, download this guide.